1.蛋白質序列和相關數據庫
SWISS-PROT - SWISS-PROT annotated protein sequence db

PIR-international -The Protein Information Resource (protein sequence)

MIPS - Martinsried institute for protein sequence and homology data and yeast genome information

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PROSITE - PROSITE dictionary of protein sites and patterns

InterPro - Integrated Resources of Proteins Domains and Functional Sites

BLOCKS - BLOCKS db

DOMO - Protein domain db (Automatically generated)

Pfam - Protein families db (HMM derived) [Mirror at Sanger]

PRINTS - Protein Motif fingerprint db

ProDom - Protein domain db (Automatically generated)

PROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins

SBASE - SBASE domain db (Protein domain sequence library)

SMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Research Tool)

ProClass - Protein sequence alignments and curation of protein families

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Kabat - Kabat db of protein of immunological interest

PMD - Protein Mutant db

2.蛋白質三維結構和相關數據庫

PDB - Protein Data Bank [Mirrors in EBI]

BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy

SWISS-MODEL Repository - Automatically generated protein models db

ModBase - Db of comparative protein structure models

CATH - UCL BSM structural classification of proteins

SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia]

Mol_R_Us - Molecules R Us, browser for PDB

BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server

PRESAGE - Collaborative resource for structural genomics

ReLiBase - Receptor/ligand complexes db [Mirror in USA]

TOPS - Protein topology atlas

CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD))

HSSP - Homology-derived secondary structure of proteins db

SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules

BioImage - Biological image db (contains imaging data on macromolecules)

3.蛋白質二維凝膠電泳數據庫

WORLD-2DPAGE - A complete index of 2D-PAGE db and servers

Phoretix links - Phoretix page of links to 2D gel db

4.信號傳導及蛋白質-蛋白質相互作用相關數據庫

DIP - Db of Interacting Proteins

INTERACT - Protein-Protein interaction db

ProNet - Protein-Protein interaction db

CANSITE - Signal Transduction's Web

SPAD - Signaling pathway db

CSNDB - Cell Signaling Networks db

5.DNA和蛋白質相互作用數據庫

DPInteract - DNA-Proteins interactions db